Question: hii am trying to create a di peptide bond between...
I am trying to create a di peptide bond between phenylalanine and serine using a program called chemagic.
I thought I created a dipeptide bond correctly but I am unsure because when I look at the electrostatic potential map it looks incorrect as it shows that my OH group is less electronegative (blue) when it should be more electronegative (red).
Can someone please help me with this?
I will attach pictures of phenylalanine and serine individually, serine and alanine in a di peptide bond(which im not sure is correct), the electrostatic map.
Dipeptide bonded serine and phenylalaine
Electrostatic Potential Map